2.0 CCLE Gene Expression

In [1]:
from clustergrammer2 import net

clustergrammer2 backend version 0.2.9
In [2]:
import pandas as pd
df = pd.read_csv('../data/CCLE/CCLE.txt.gz', compression='gzip', index_col=0)
In [3]:
from ast import literal_eval as make_tuple
cols = df.columns.tolist()
new_cols = [make_tuple(x) for x in cols]
df.columns = new_cols

CCLE Gene Expression Data, Z-score Genes

In [4]:
net.load_df(df)
net.filter_N_top(inst_rc='row', N_top=1000, rank_type='var')
net.normalize(axis='row', norm_type='zscore')
net.widget()
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